the Github website for Computational Catalysis Course (CHEG-5395-4995) offered by the Department of Chemical and Biomolecular Engineering at the University of Connecticut.
This project is maintained by CCML-UCONN
Path:/home/liz18025/shared/cheg4995-5395/final_project/Separation
In this project, you will be calculating the adsorption free energy of Benzene(C6H6) and Thiophene (C4H4S) on the larges pore of the ZSM-5 zeolite. Due to the limitation of the computation resource, you will perform the calculation on the cut-out model, which consist of the 10-Si-atom ring(pore) and necessary surrounding atoms.
Your tasks include the following:
Using make_ring.py
to generate a proper model for Zeolite simulation by adjusting the cutoff
value. Make sure your structure has the same stoichiometry as SiO2 to avoid electronic converging issue. Optimize its structure with by fixing surrounding atoms.
Calculate the adsorption free energy of Benzene and Thiophene on the 10-Si-atom ring of the pure ZSM-5.
Calculate adsorption free energy of Benzene and Thiophene on the 10-Si-atom ring of the ion-exchanged ZSM-5
Discuss how the adsorption isotherm (separation ability) is affected by ion-exchange.
Path:/home/liz18025/shared/cheg4995-5395/final_project/OER
Pure SnO2 itself is one of the worst OER catalysts, due to weak binging of O species on the surface. You will be calculating the adsorption free energy of O and OH on pure and doped SnO2(110) surface to obtain the theoretical OER over-potential. The paper by Man et. al. provide a good reference for you to work on this project.
The universal linear scaling between ∆G_OH and ∆G_OOH helps you to asses the theoretical over-potential using a unique descriptor (∆G_O - ∆G_OH). At standard condition,
Your tasks include the following:
Most of your calculations will run longer than your HW3, some of them may even exceed the time limit in your job submission script. In this case, you can copy relax.traj
to the .traj
you have in the qe-opt.py
and resubmit your job. The program will read the last configuration from relax.traj
and continue the optimization process.